Data and code availability

The raw and processed data for the DAP-seq datasets are available at

• NCBI GEO GSE275897.
• Zenodo https://doi.org/10.5281/zenodo.14991915.

Comparative peak data tracks from B73 and Mo17 can be viewed on JBrowse2 at http://hlab.bio.nyu.edu/projects/zm_crm/.

The analysis pipelines are available via GitHub at https://github.com/hlab1/Maize_B73_Mo17_DAP.